Package: epimdr 0.6-5
epimdr: Functions and Data for "Epidemics: Models and Data in R"
Functions, data sets and shiny apps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) <https://www.springer.com/gp/book/9783319974866>. The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course <https://www.coursera.org/learn/epidemics>.
Authors:
epimdr_0.6-5.tar.gz
epimdr_0.6-5.zip(r-4.5)epimdr_0.6-5.zip(r-4.4)epimdr_0.6-5.zip(r-4.3)
epimdr_0.6-5.tgz(r-4.4-any)epimdr_0.6-5.tgz(r-4.3-any)
epimdr_0.6-5.tar.gz(r-4.5-noble)epimdr_0.6-5.tar.gz(r-4.4-noble)
epimdr_0.6-5.tgz(r-4.4-emscripten)epimdr_0.6-5.tgz(r-4.3-emscripten)
epimdr.pdf |epimdr.html✨
epimdr/json (API)
| # Install 'epimdr' in R: |
| install.packages('epimdr', repos = c('https://objornstad.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/objornstad/epimdr/issues
- Icelandflu - Monthly incidence of influenza-like illness in Iceland between 1980 and 2009.
- SH9 - Daily measures of malaria infected mice.
- black - Black's measles seroprevalence data.
- burnett - Burnett's Parasitoid-Host data.
- ccs - UK measles CCS data.
- cholera - Dacca cholera death data.
- dalziel - Measles incidence across 40 US cities
- ebola - Sierra-Leone Ebola 2015 data.
- ferrari - Ferrari et al. 2005 outbreak data.
- filipendula - Filipendula rust data.
- fiv - FIV infection in cats.
- flu - Boarding school influenza data.
- gm - Defoliated by gypsy moth each in northeast US 1975-2002.
- gonnet - De et al. 2004 gonorrhea contact matrix
- gra - Euthamia graminifolia rust data.
- litter - Bordetella bronchiseptica in rabbit kittens.
- magono - Massachusetts gonorrhea data.
- meas - Bi-weekly measles incidence in London from 1944-65.
- mossong - POLYMOD contact-rate data by Age.
- niamey - Weekly measles incidence from 2003-04 in Niamey, Niger.
- niamey_daily - Day of appearance of each measles case from 2003-04 outbreak in Niamey, Niger.
- pagiard - Weekly incidence of giardia in Pennsylvania between 2006 and 2014.
- paili - Weekly deaths from Influenza-like illness in Pennsylvania between 1972 and 1998.
- palymes - Weekly incidence of Lymes disease in Pennsylvania between 2006 and 2014.
- pameasle - Weekly incidence of measles in Pennsylvania between 1928 and 1969.
- pertcop - Weekly whooping cough incidence from 1900-1937 in Copenhagen, Denmark.
- peru - Rubella in Peru data.
- rabbit - Rabbit _Bordetella brochiseptica_ data.
- rabies - Raccoon rabies data.
- silene2 - Antler smut on wild campion.
- tydiphtheria - Weekly incidence of diphtheria in Philadelphia between 1914 and 1947.
- tymeasles - Weekly incidence of measles in Philadelphia between 1914 and 1947.
- tyscarlet - Weekly incidence of scarlet fever in Philadelphia between 1914 and 1947.
- tywhooping - Weekly incidence of whooping cough in Philadelphia between 1925 and 1947.
- usflu - US 1975/76 ILI data.
Last updated 5 years agofrom:1c01406a95. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 18 2024 |
| R-4.5-win | OK | Sep 18 2024 |
| R-4.5-linux | OK | Sep 18 2024 |
| R-4.4-win | OK | Sep 18 2024 |
| R-4.4-mac | OK | Sep 18 2024 |
| R-4.3-win | OK | Sep 18 2024 |
| R-4.3-mac | OK | Sep 18 2024 |
Exports:BarabasiAlbertchainSIRcoyneflowFieldgillespieintegrandpcllik.cbllik.pcMay.appNBNetworkSIRorv.appr0funretrospecringlatticeSEIR.appseirmodseirmod2SEIRS.appsim.cbSimTsirSimTsir2SIR.appsiragemodsirmodsirwmodsivmodtauTSIR.appTSIRllyapTSIRlyapWattsStrogatz
Dependencies:base64encbslibcachemclicommonmarkcrayondeSolvedigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmemoisemimepolsplinepromisesR6rappdirsRcpprlangsassshinysourcetoolswithrxtable
