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  "Title": "Functions and Data for \"Epidemics: Models and Data in R\"",
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  "Date": "2020-01-23",
  "Authors@R": "person(c(\"Ottar\", \"N.\"), \"Bjornstad\", email = \"onb1@psu.edu\", role = c(\"aut\", \"cre\"))",
  "Author": "Ottar N. Bjornstad [aut, cre]",
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  "Description": "Functions, data sets and shiny apps for \"Epidemics: Models\nand Data in R\" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3)\n<https://www.springer.com/gp/book/9783319974866>. The package\ncontains functions to study the S(E)IR model, spatial and\nage-structured SIR models; time-series SIR and chain-binomial\nstochastic models; catalytic disease models; coupled map\nlattice models of spatial transmission and network models for\nsocial spread of infection. The package is also an advanced\nquantitative companion to the coursera Epidemics Massive Online\nOpen Course <https://www.coursera.org/learn/epidemics>.",
  "License": "GPL-3",
  "URL": "https://github.com/objornstad/epimdr,\nhttps://www.springer.com/gp/book/9783319974866,\nhttp://ento.psu.edu/directory/onb1",
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  "Repository": "https://objornstad.r-universe.dev",
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      "table": true,
      "tojson": true
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    {
      "name": "tywhooping",
      "title": "Weekly incidence of whooping cough in Philadelphia between 1925 and 1947.",
      "object": "tywhooping",
      "class": [
        "data.frame"
      ],
      "fields": [
        "YEAR",
        "WEEK",
        "PHILADELPHIA",
        "TIME",
        "TM"
      ],
      "rows": 1200,
      "table": true,
      "tojson": true
    },
    {
      "name": "usflu",
      "title": "US 1975/76 ILI data.",
      "object": "usflu",
      "class": [
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        "Acronym",
        "Pop",
        "Latitude",
        "Longitude",
        "Start",
        "Peak"
      ],
      "rows": 49,
      "table": true,
      "tojson": true
    }
  ],
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    {
      "page": "BarabasiAlbert",
      "title": "Function to generate a Barabasi-Albert network",
      "topics": [
        "BarabasiAlbert"
      ]
    },
    {
      "page": "black",
      "title": "Black's measles seroprevalence data.",
      "topics": [
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    {
      "page": "burnett",
      "title": "Burnett's Parasitoid-Host data.",
      "topics": [
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    },
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      "page": "ccs",
      "title": "UK measles CCS data.",
      "topics": [
        "ccs"
      ]
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    {
      "page": "chainSIR",
      "title": "Gradient-function for the chain-SIR model",
      "topics": [
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      "page": "cholera",
      "title": "Dacca cholera death data.",
      "topics": [
        "cholera"
      ]
    },
    {
      "page": "coyne",
      "title": "Gradient-function for Coyne et al's rabies model",
      "topics": [
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    {
      "page": "dalziel",
      "title": "Measles incidence across 40 US cities",
      "topics": [
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    {
      "page": "ebola",
      "title": "Sierra-Leone Ebola 2015 data.",
      "topics": [
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    {
      "page": "ferrari",
      "title": "Ferrari et al. 2005 outbreak data.",
      "topics": [
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      "page": "filipendula",
      "title": "Filipendula rust data.",
      "topics": [
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    },
    {
      "page": "fiv",
      "title": "FIV infection in cats.",
      "topics": [
        "fiv"
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    },
    {
      "page": "flowField",
      "title": "Flowfield",
      "topics": [
        "flowField"
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    },
    {
      "page": "flu",
      "title": "Boarding school influenza data.",
      "topics": [
        "flu"
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    },
    {
      "page": "gillespie",
      "title": "Gillespie exact algorithm",
      "topics": [
        "gillespie"
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    },
    {
      "page": "gm",
      "title": "Defoliated by gypsy moth each in northeast US 1975-2002.",
      "topics": [
        "gm"
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    },
    {
      "page": "gonnet",
      "title": "De et al. 2004 gonorrhea contact matrix",
      "topics": [
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    },
    {
      "page": "gra",
      "title": "Euthamia graminifolia rust data.",
      "topics": [
        "gra"
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    {
      "page": "Icelandflu",
      "title": "Monthly incidence of influenza-like illness in Iceland between 1980 and 2009.",
      "topics": [
        "Icelandflu"
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    },
    {
      "page": "integrandpc",
      "title": "Auxillary function used by llik.pc",
      "topics": [
        "integrandpc"
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    },
    {
      "page": "litter",
      "title": "Bordetella bronchiseptica in rabbit kittens.",
      "topics": [
        "litter"
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    },
    {
      "page": "llik.cb",
      "title": "Negative log-likelihood function for the chain-binomial model",
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    {
      "page": "llik.pc",
      "title": "Function to estimate parameters for the picewise-constant catalytic model",
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      "page": "magono",
      "title": "Massachusetts gonorrhea data.",
      "topics": [
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    },
    {
      "page": "May.app",
      "title": "Launch a shiny-app simulating May's Parasitoid-host Model model",
      "topics": [
        "May.app"
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    },
    {
      "page": "meas",
      "title": "Bi-weekly measles incidence in London from 1944-65.",
      "topics": [
        "meas"
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    },
    {
      "page": "mossong",
      "title": "POLYMOD contact-rate data by Age.",
      "topics": [
        "mossong"
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    },
    {
      "page": "NB",
      "title": "The Nicholson-Bailey model",
      "topics": [
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    },
    {
      "page": "NetworkSIR",
      "title": "Function to simulate an epidemic on a network",
      "topics": [
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        "NetworkSIR"
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      "title": "Weekly measles incidence from 2003-04 in Niamey, Niger.",
      "topics": [
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    },
    {
      "page": "niamey_daily",
      "title": "Day of appearance of each measles case from 2003-04 outbreak in Niamey, Niger.",
      "topics": [
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    },
    {
      "page": "orv.app",
      "title": "Launch a shiny-app to study outbreak-response vaccination campaigns",
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    },
    {
      "page": "pagiard",
      "title": "Weekly incidence of giardia in Pennsylvania between 2006 and 2014.",
      "topics": [
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    },
    {
      "page": "paili",
      "title": "Weekly deaths from Influenza-like illness in Pennsylvania between 1972 and 1998.",
      "topics": [
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    },
    {
      "page": "palymes",
      "title": "Weekly incidence of Lymes disease in Pennsylvania between 2006 and 2014.",
      "topics": [
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    },
    {
      "page": "pameasle",
      "title": "Weekly incidence of measles in Pennsylvania between 1928 and 1969.",
      "topics": [
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    },
    {
      "page": "pertcop",
      "title": "Weekly whooping cough incidence from 1900-1937 in Copenhagen, Denmark.",
      "topics": [
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    },
    {
      "page": "peru",
      "title": "Rubella in Peru data.",
      "topics": [
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    },
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      "title": "Function to plot an object of class CM",
      "topics": [
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    {
      "page": "rabbit",
      "title": "Rabbit _Bordetella brochiseptica_ data.",
      "topics": [
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    },
    {
      "page": "rabies",
      "title": "Raccoon rabies data.",
      "topics": [
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    {
      "page": "retrospec",
      "title": "Function to predict efficacy of outbreak-response vaccination campaign",
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      "page": "ringlattice",
      "title": "Function to generate a ring lattice",
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      "page": "SEIR.app",
      "title": "Launch a shiny-app simulating the seasonal SEIR model",
      "topics": [
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    },
    {
      "page": "seirmod",
      "title": "Gradient-function for the SEIR model",
      "topics": [
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    {
      "page": "seirmod2",
      "title": "Gradient-function for the forced SEIR model",
      "topics": [
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    },
    {
      "page": "SEIRS.app",
      "title": "Launch a shiny-app simulating the SEIRS model",
      "topics": [
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    },
    {
      "page": "SH9",
      "title": "Daily measures of malaria infected mice.",
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    },
    {
      "page": "silene2",
      "title": "Antler smut on wild campion.",
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      "page": "SimTsir",
      "title": "Function to simulate the stochastic TSIR",
      "topics": [
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      "page": "SimTsir2",
      "title": "Function to simulate the seasonally-forced TSIR",
      "topics": [
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      "page": "SIR.app",
      "title": "Launch a shiny-app simulating the SIR model",
      "topics": [
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    },
    {
      "page": "siragemod",
      "title": "Gradient-function for the age-structured SIR model with possibly heterogeneous mixing",
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    },
    {
      "page": "sirmod",
      "title": "Gradient-function for the SIR model",
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      "page": "sirwmod",
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    {
      "page": "sivmod",
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      "page": "summary.netSIR",
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      "title": "Launch a shiny-app simulating TSIR model",
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    {
      "page": "TSIRllyap",
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    {
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      "title": "Function to do Lyapunov exponent calculations from a TSIR simulation",
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    {
      "page": "tydiphtheria",
      "title": "Weekly incidence of diphtheria in Philadelphia between 1914 and 1947.",
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    {
      "page": "tymeasles",
      "title": "Weekly incidence of measles in Philadelphia between 1914 and 1947.",
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    },
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      "page": "tyscarlet",
      "title": "Weekly incidence of scarlet fever in Philadelphia between 1914 and 1947.",
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    {
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      "title": "Weekly incidence of whooping cough in Philadelphia between 1925 and 1947.",
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      "page": "usflu",
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      "page": "WattsStrogatz",
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}